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https://blog.karinlag.no/2013/10/rnammer-install/
Oct 12, 2013 · FATAL: POSIX threads support is not compiled into HMMER; –cpu doesn’t have any effect remove ‘–cpu 1’ instead of ‘-cpu 1’ flag to avoid confusion! Double dashes instead on only one. In addition, maybe add to the manual and website comment that if installing on a Mac OSX you’d need to change the Unix version to Darwin:
https://sourceforge.net/p/trinotate/mailman/message/31683867/
Hi, I'm using Trinotate_r20131110 and I'm now at step 6 of the Trinotate instructions (Running RNAMMER to identify rRNA transcripts). I've successfully installed and tested Rnammer 1.2.
https://blog.karinlag.no/category/rnammer/
Oct 12, 2013 · Posix errors You may end up with errors that say something along the lines of FATAL: POSIX threads support is not compiled into HMMER; --cpu doesn't have any effect
https://stackoverflow.com/questions/37062445/autoconf-no-posix-thread-support-configure-possibly-using-wrong-code-to-verif
Autoconf - No POSIX thread support. Configure possibly using wrong code to verify support. How to fix it? Ask Question ... error: POSIX threads support is required ... How to add posix threads into eclipse on windows (MinGW) 0.
https://sites.google.com/site/metagenomicanalysis/home
Metagenomic Analysis. Search this site. Home. Sitemap. Home. ... Unpack the downloaded file into a temporary directory. Unpacking requires another 9.1 GB disk space. The tar.gz file is safe to be removed. ... FATAL: POSIX threads support is not compiled into HMMER; --cpu doesn't have any effect. Then open core-rnammer file.
https://github.com/bioteam/DIYA
Contribute to bioteam/DIYA development by creating an account on GitHub. ... Alternatively: >perldoc lib/diya.pm Or wherever diya.pm can be found. SAMPLE PIPELINES Diya is not itself a pipeline, but rather a simple infrastructure for running pipelines which take the form of xml configuration files. ... POSIX threads support is not compiled into ...
https://yokazaki.hatenablog.com/entry/2016/11/30/200512
FATAL: POSIX threads support is not compiled into HMMER; --cpu doesn't have any effect というエラーが出ることがあって（自分は出た）、その場合は"core-rnammer"を テキストエディタ で開き、 スクリプト 内にある --cpu 1 という記述（2か所）を削除し、保存。
https://sourceforge.net/p/trinotate/mailman/message/31469160/
Hi Shu, This looks like an RNAMMER related problem in that the software appears to need the perl module XML::Simple installed. It should be easy to install, but you might need admin privileges: perl -MCPAN -e shell install XML::Simple best, ~brian On Tue, Oct 1, 2013 at 1:12 PM, Shu CHEN <szc0049@...>wrote: > Hi, > > When I ran the rnammer, I got the following feedbacks?
https://groups.google.com/d/topic/trinityrnaseq-users/WZjkGSMUT3I
Hello all, I am trying to run the RnammerTranscriptome.pl script in Trinotate to identify rRNAs in my assembly. I have installed rnammer (v1.2), and have also tested it with the example data, without any apparent error, so all seems to be ok, however, everytime I try to run the Trinotate script on my data, I get the following output in the screen:
https://github.com/andrewcstewart/DIYA
Repository for DIYA code. Contribute to andrewcstewart/diya development by creating an account on GitHub. ... Contribute to andrewcstewart/diya development by creating an account on GitHub. Skip to content. Why GitHub? Features → Code review ... POSIX threads support is not compiled into HMMER; --cpu doesn't have any effect". What do I do? A ...
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