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http://ib.berkeley.edu/courses/ib200a/labs/ib200a_lab10_bootstrap_jackknife_bremer.pdf
You may remember finding Bremer support from the lab on “Advanced PAUP,” but I’ll go over it again anyway. First, you’ll need to switch to a new data file—the primates.nex file isn’t a very good example for Bremer support because everything has a really high decay index. 12.
https://www.geol.umd.edu/~tholtz/G331/lectures/cladistics5.pdf
for morphological data: Bremer support and the Bootstrap. Bremer support is by far the most useful for the amount of data we use as palaeontologists (we rarely have more 100 characters). Bremer support is named after the Swedish botanist Kore Bremer, who devised the method, but it is also known as the “Decay Index”, for reasons that will
https://en.wikipedia.org/wiki/Maximum_parsimony_(phylogenetics)
Maximum parsimony is an intuitive and simple criterion, and it is popular for this reason. ... as are the bootstrap and jackknife procedures described above. Bremer support ... Double-decay analysis is a decay counterpart to reduced consensus that evaluates the decay index for all possible subtree relationships (n-taxon statements) ...
http://www.iab.uaf.edu/people/derek_sikes/Biol615/handouts/BIO615-25.pdf
1. Consistency Index 2. g1 statistic, PTP - test 3. Consensus trees 4. Decay index (Bremer Support) 5. Bootstrapping / Jackknifing 6. Statistical hypothesis testing (frequentist) 7. Posterior probability (see lecture on Bayesian) Confidence - Assessment of the Strength of the Phylogenetic Signal - part 2 Multiple optimal trees
http://www.mobot.org/plantscience/ResBot/Repr/Zander-Phyloinformatics2004.pdf
The Decay Index (also known as Bremer Support) (Bremer 1988, 1994; DeBry 2001; Giribet 2003; Morgan 1997) is another measure of clade reliability commonly defined as the number of steps needed to "relax" parsimony until a given branch arrangement collapses in a consensus tree. For the simple artificial data sets in the
http://ib.berkeley.edu/courses/ib200a/ib200a_sp2008/Lab12_Support.pdf
You may remember finding Bremer support from the lab on “Advanced PAUP,” but I’ll go over it again anyway. First, you’ll need to switch to a new data file—the primates.nex file isn’t a very good example for Bremer support because everything has a really high decay index. 11.
https://ib200lab.files.wordpress.com/2014/01/ib200_lab06_support_measures.pdf
Lab 06: Support Measures Bootstrap, Jackknife, and Bremer ... 4942, to find which nodes have a decay index of 1, you need to find all the trees with 4943 steps ... they have a decay index of 1. To find higher Bremer support values increase the number of steps in the minimum trees:
https://en.wikipedia.org/wiki/Phylogenetics
In biology, phylogenetics / ˌ f aɪ l oʊ dʒ ə ˈ n ɛ t ɪ k s,-l ə-/ (Greek: φυλή, φῦλον – phylé, phylon = tribe, clan, race + γενετικός – genetikós = origin, source, birth) is the study of the evolutionary history and relationships among individuals or groups of organisms (e.g. species, or populations).These relationships are discovered through phylogenetic ...
https://www.researchgate.net/profile/Kai_Mueller6/publication/237708496_Short_Communication_PRAP-computation_of_Bremer_support_for_large_data_sets/links/0046352e256e8377d8000000.pdf
PRAP—computation of Bremer support for large data sets ... also known as ‘‘decay index’’€ ... of Oxelmanet al. (1999) for the calculation of Bremer support(BS) in large trees; and (ii ...
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1282575/
Oct 29, 2005 · For parsimony analyses, the most common way to estimate confidence is by resampling plans (nonparametric bootstrap, jackknife), and Bremer support (Decay indices). The recent literature reveals that parameter settings that are quite commonly employed are not those that are recommended by theoretical ...Cited by: 138
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