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http://ib.berkeley.edu/courses/ib200a/labs/ib200a_lab10_bootstrap_jackknife_bremer.pdf
Lab 10: Bootstrap, Jackknife, and Bremer Support Turn in: Just the .tre files from questions 9, 11, and 22. So ran a heuristic search and you got a tree. Now what? How do you tell how well (or poorly) supported the tree you’ve come up with is? Well, of course the truth is that for most cases in
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https://www.bremer.com/support/mortgage-loans
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https://www.researchgate.net/post/Why_TNT_and_WinClada_constructed_strict_consensus_trees_of_different_topology
I have to find the consensus tree based on a given morphological data matrix (30 taxa, 40 characters), and then calculate Bremer support. The analysis was run both in WinClada and TNT, but the ...
https://www.researchgate.net/publication/8638398_PRAP_-_Computation_of_Bremer_support_of_large_data_sets
PRAP – Computation of Bremer support of large data sets Article in Molecular Phylogenetics and Evolution 31(2):780-2 · June 2004 with 68 Reads How we measure 'reads'
http://evolution.genetics.washington.edu/phylip/software.pars.html
Torsten Eriksson of the Bergius Botanical Garden, Stockholm, Sweden (torsten (at) bergianska.se) has written a program, AutoDecay which generates Decay Indices from an existing PAUP* 4.0 treefile. It is intended to simplify the the task of creating reverse constraint trees in PAUP* 4.0 and subsequent generation of Bremer support values.
http://www.goeker.org/mg/course/Bremer.pdf
Computing Bremer support values Bremer support In this chapter, we assume that you are already familiar with conducting heuristic searches under the maximum parsimony (MP) criterion using PAUP* and with the computation of the strict consensus from all most parsimonious trees found. You probably also know that, as any other alignment-based ...
http://markmail.org/message/n5s4v6znwgbpi4z6
Thanks for all those who replied me and tried to give some light to this subject. I will reply each one as soon as possible, but many thanks in advance. I received very interesting suggestions (WinClada, NoNa, TNT, PAUP, AutoDecay, and a script to NoNa - thanks Fernando!) and …
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1282575/
Oct 29, 2005 · The optimal search strategy to be applied during resampling was previously addressed solely via standard search strategies available in PAUP*. The question of a compromise between search extensiveness and improved support accuracy for Bremer support received even less attention.Cited by: 138
https://www.tandfonline.com/doi/pdf/10.1017/S1477200008002946
state optimisations were examined using WinClada. Trees were viewed and summarised in WinClada. Bremer support values (Bremer, 1994) were calculated in NONA using the commands 'hold 10000', 'suboptimal = 10' and 'bsupport = 10'. Bootstrap support values were calculated in NONA with 1000 replications and saving the consensus of each replication.
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